Category:Plugins

3

• 3D Objects Counter
• 3D Surface Plot
• 3D Viewer

A

• Align RGB planes
• Anaglyph for Red Cyan glasses
• Analyze Skeleton 2D time series
• AnalyzeSkeleton
• Anisotropic Diffusion 2D
• Arrow
• Auto Local Threshold
• Auto Threshold

B

• BUnwarpJ
• Blend two images

C

• Cell Counter
• Celsius to fahrenheit
• Chess
• Colocalization Test
• Colocalization Threshold
• Color Inspector 3D
• Colour Deconvolution
• Colour merge
• Copy Pixel Size

D

• Delaunay Voronoi
• Delayed Snapshot
• Diffraction PSF 3D
• Distortion Correction
• Dithering
• Dynamic ROI Profiler
• Dynamic Reslice

E

• Enhance Local Contrast (CLAHE)
• Extract Images From PDF...

F

• Feature Extraction
• Fiji Logo 3D
• 2010-06-14 - Fiji "Heidelberg" is out
• Fiji's Menu
• File Import
• Find Dimension of Raw Image
• FlowJ

G

• Granulometric Filtering
• Graph Cut
• Grid

I

• Interactive Affine
• Interactive Moving Least Squares
• Interactive Perspective
• Interactive Rigid
• Interactive Similarity
• Iterative Deconvolve 3D

K

• Kalman Stack Filter

L

• LSM Toolbox
• Level Sets
• List all threads
• Local Thickness

M

• MTrack2
• Manual Tracking
• Maximum Entropy Threshold
• Mixture Modeling Thresholding
• Moving Least Squares
• Multi Otsu Threshold
• MultiThresholder
• Multiple Image Processor
• Multithreaded Image Processing
• Multithreaded Image Processing in Javascript

N

• Name Landmarks and Register
• Nucleus Counter

O

• Otsu Thresholding

P

• PIV analyser
• Parallel Iterative Deconvolution
• Parallel Spectral Deconvolution
• Particle Tracker
• PlugIn Design Guidelines
• Point Picker

R

• RATS: Robust Automatic Threshold Selection
• RGB Measure Plus
• RGB Profiler
• RGB to Montage
• RGB-Gray Merge

R cont.

• Register Virtual Stack Slices
• Report a Bug
• Retinex
• Rolling Ball Background Subtraction

S

• SIOX: Simple Interactive Object Extraction
• SPIM Registration
• SPIM Registration Method
• Same Slice in Multiple Images
• Save as animated gif
• Segmentation Editor
• Sigma Filter
• Simple Neurite Tracer
• Simulate Color Blindness
• Skeletonize3D
• Slice Labeler
• Spheres and Tubes in 3D
• Spline Deformation Generator
• SpotTracker
• Stack Manipulation
• Statistical Region Merging
• Stitching 2D/3D
• Straighten...
• Sync Windows

T

• Test Java3D
• Time Stamper
• TopoJ
• Trainable Segmentation Plugin
• Trainable Segmentation Plugin Implementation
• TrakEM2
• Transform Virtual Stack Slices
• Tutorial Maker

U

• Update Fiji
• Upload Sample Image
• Using the Script Editor

V

• VIB Protocol
• View5D
• Volume Viewer

W

• Watershed Algorithm (ImageJ plugin)